Journals in Bioinformatics and computational biology

8 results in All results

BioSystems

• ISSN: 0303-2647
• 5 Year impact factor: 1.8
• Impact factor: 2

BioSystems encourages theoretical, computational, and experimental articles that link biology, evolutionary concepts, and the information sciences. The journal is dedicated to publishing research on self-organizing information systems—with the goal of obtaining a better understanding of the origins of biochemical, genetic, epigenetic, physiological, cognitive, linguistic, sociocultural, and biological organization and evolution.The scope of the journal encompasses the fundamental nature of biological information and (self)-organization. This includes quantum phenomena in information transfer, natural computing, biological coding systems, biological complexity, theoretical biology, artificial life, computational modeling of complex biological systems, evolutionary models of computation, application of biological principles to the design of novel computing systems, and the use of biomolecular materials to synthesize artificial systems that capture essential principles of natural biological information processing.The journal does not publish purely medical, computational, or ecological research, unless it is clearly linked to the basic and conceptual aspects of biological organization.The editors encourage articles that deal, in particular, with the following topics:Biological computationMolecular recognitionPhysical foundations of biologyQuantum phenomena in biological systemsCellular controlNeuromolecular computingBiological coding systemsMolecular computing processesSelf-organizing and self-replicating systemsOrigin of the genetic codeOrigins and evolution of genomesStochastic evolutionary algorithmsOrigins and evolution of mind and languageEcological evolutionary developmental biologyReticulate evolution (symbiosis, symbiogenesis, lateral gene transfer)Simulation of genetic and ecological systemsApplications (neural nets, machine learning, robotics)History and philosophy of scienceIn addition, the editors encourage the following types of papers for submission: Papers that extract novel biological insights from multidimensional data, using AI-driven language modelsBiological hypothesis papers producing new insights based on a body of pre-existing empirical researchPerspectives papers intended to stimulate scientific discussions and provide guidelines for future directions

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Biochimica et Biophysica Acta: Proteins and Proteomics

• ISSN: 1570-9639
• 5 Year impact factor: 2.8
• Impact factor: 2.5

BBA Proteins and Proteomics covers protein structure conformation and dynamics; protein folding; protein-ligand interactions; enzyme mechanisms, models and kinetics; protein physical properties and spectroscopy; and proteomics and bioinformatics analyses of protein structure, protein function, or protein regulation.The journal no longer considers manuscripts dealing with binding of compounds such as drugs or drug analogues to circulatory proteins such as serum albumin. These studies are better accommodated in journals dealing with drug design and development.Manuscripts must advance our insights into the molecular and mechanistic properties of proteins. Computational studies must generally be validated or complemented by experimental studies. Studies only consisting of computational work will not be considered unless they provide new theoretical insight that allows us to better understand or reinterpret surprising or unexpected experimental data.Comparative proteomics studies are generally not considered for review unless they provide specific insights into the structural and/or functional properties of individual proteins. Proteomics studies must also address properties of individual proteins and should as far as possible be validated by direct investigations of relevant identified proteins.Concise and comprehensive reviews of recent developments are considered for publication. However, authors are strongly advised to consult one of the Executive Editors before starting a review.Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center

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Cell Systems

• ISSN: 2405-4712
• 5 Year impact factor: 11.1
• Impact factor: 9

For more information go to http://www.cell.com/cell-systems Cell Systems was established in 2015 to provide a home at Cell Press for elegant work that addresses fundamental questions in systems biology. "Systems biology," as we broadly define it, is work that develops a rigorous understanding of any biological phenomenon where one plus one does not apparently equal two. Disciplines in the physical sciences have met this challenge for a long time, and we've found that our strongest papers tend to apply quantitative, inference-based approaches taken in physics, engineering, mathematics, and computer science to salient biological questions.We believe it's our responsibility to ensure that the next generation of scientists can begin their work on solid ground. Accordingly, we focus our review process on validity and scientific acuity, rather than more subjective feelings and opinions. We also believe that scientific transparency is of paramount importance. A study's structure and presentation should be candid and forthright (e.g. it should ensure fair comparisons; it should either use non-arbitrary cut-offs or clearly explained arbitrary cut-offs that do not affect outcomes; its data visualization choices should promote objective understanding; its limitations should not be obscured). Fundamentally good scientific practice also demands that studies be repeatable. We encourage authors to make their code and data FAIR?that is findable, accessible, interoperable, and reusable, as defined by the NIH data commons. Although it is too early to formally require that all studies we publish be FAIR, we consider that requirement annually.As editors, we hold ourselves to the same standards of transparency but also recognize that living up to those standards requires constant effort. Like all journals, Cell Systems is a work in progress. A collection of editorials that document our thoughts and their evolution can be found here. We are always happy to talk to you.Visit the Cell Press website for more information about Cell System- http://www.cell.com/cell-systems/home

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Computational Biology and Chemistry

• ISSN: 1476-9271
• 5 Year impact factor: 2.6
• Impact factor: 2.6

Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.

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Experimental Parasitology

• ISSN: 0014-4894
• 5 Year impact factor: 1.6
• Impact factor: 1.4

Experimental Parasitology emphasizes modern approaches to parasitology, including molecular biology and immunology. The journal features original research papers on the physiological, metabolic, immunologic, biochemical, nutritional, and chemotherapeutic aspects of parasites and host-parasite relationships.Benefits to authors We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services .Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center

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International Journal for Parasitology

• ISSN: 0020-7519
• 5 Year impact factor: 3.5
• Impact factor: 3.7

Sponsored by the Australian Society for ParasitologyThe International Journal for Parasitology publishes the results of original research in all aspects of basic and applied parasitology, including all the fields covered by its Specialist Editors, and ranging from parasites and host-parasite relationships of intrinsic biological interest to those of social and economic importance in human and veterinary medicine and agriculture. Original research includes the development of novel and innovative concepts and ideas, as well as experimental and observational science that raises new hypotheses.We do not publish new genome sequences and assemblies alone without new and significant insight into the biology of the parasite, the parasite-host relationship or mechanisms of pathogenesis. Because of its breadth of discipline coverage, the aims and significance of all contributions should be made clear to readers who are not expert in the particular subject of papers. In applied parasitology, it will tend to favour contributions of broader significance to the subject rather than narrow, highly specialised applications. The principal form of publication is the full length paper which contains substantial results from a major program of research. The Journal also provides a medium for the publication of shorter, but complete, papers reporting highly significant original findings, as Succinctus articles. It also publishes Thematic Issues incorporating papers on a topical theme and commissions papers with emphasis on shorter, focussed Reviews of topical issues and strategically important subjects. The Journal encourages critical comment and debate on matters of current controversy in parasitology via "Current Opinions".Benefits to authors We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services .Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support CenterThe International Journal for Parasitology has also launched two specialist, open access titles you are welcome to submit to:International Journal for Parasitology: Parasites and WildlifeInternational Journal for Parasitology: Drugs and Drug Resistance

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Journal of Microbiological Methods

• ISSN: 0167-7012
• 5 Year impact factor: 2
• Impact factor: 1.7

The Journal of Microbiological Methods publishes scholarly and original articles, notes and review articles. These articles must include novel and/or state-of-the-art methods, or significant improvements to existing methods. Novel and innovative applications of current methods that are validated and useful will also be published. JMM strives for scholarship, innovation and excellence. This demands scientific rigour, the best available methods and technologies, correctly replicated experiments/tests, the inclusion of proper controls, calibrations, and the correct statistical analysis. The presentation of the data must support the interpretation of the method/approach.All aspects of microbiology are covered, except virology. These include agricultural microbiology, applied and environmental microbiology, bioassays, bioinformatics, biotechnology, biochemical microbiology, clinical microbiology, diagnostics, food monitoring and quality control microbiology, microbial genetics and genomics, geomicrobiology, microbiome methods regardless of habitat, high through-put sequencing methods and analysis, microbial pathogenesis and host responses, metabolomics, metagenomics, metaproteomics, microbial ecology and diversity, microbial physiology, microbial ultra-structure, microscopic and imaging methods, molecular microbiology, mycology, novel mathematical microbiology and modelling, parasitology, plant-microbe interactions, protein markers/profiles, proteomics, pyrosequencing, public health microbiology, radioisotopes applied to microbiology, robotics applied to microbiological methods,rumen microbiology, microbiological methods for space missions and extreme environments, sampling methods and samplers, soil and sediment microbiology, transcriptomics, veterinary microbiology, sero-diagnostics and typing/identification.The editors, editorial board members and scholarly reviewers are active scientists with an immense amount of collective experience that is used during the review and revision stages of articles. We encourage the submission of proposals for scholarly reviews and specials issues on emerging microbiological methods that are central to advancing microbiological knowledge. We look forward to receiving your proposals and articles.Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center

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Molecular and Biochemical Parasitology

• ISSN: 0166-6851
• 5 Year impact factor: 1.6
• Impact factor: 1.4

Molecular and Biochemical Parasitology provides a medium for rapid publication of investigations of the molecular biology and biochemistry of parasitic protozoa and helminths and their molecular interactions with their definitive and intermediate hosts and their vectors.The main subject areas covered are:the structure, biosynthesis, degradation, properties and function of parasite biomolecules - DNA, RNA, proteins, lipids, carbohydrates and small molecular-weight substanceshost-parasite relationships particularly as related to specific parasite molecules and to the response of host cells to infectionvector-parasite relationships at the molecular levelintermediary metabolism and bioenergeticsdrug target characterization and the mode of action of antiparasitic drugsanalysis of gene function, expression, and of genome structure and stabilityanalysis of variation in parasite populations relevant to genetic exchange, pathogenesis, drug and vaccine target characterization, and drug resistance; please note that genetic variation data must be supported by phenotypic/experimental data showing the effect of the variation, and that papers reporting solely on allele frequencies in specific regions will not be accepted.parasite protein trafficking, organelle biogenesis, and cellular structure especially with reference to the roles of specific moleculesmolecular and biochemical aspects of membrane structure and functionparasite programmed cell death, development, and cell division at the molecular levelmethods reports - descriptions of novel or newly-optimized methods with broad applicability to molecular and biochemical parasitologyPapers will only be accepted for publication if they fall within these areas, if they contain original and complete work of high scientific quality, and if they are well presented. Papers solely confirming the conserved functions of genes previously studied in other organisms will not be considered. We welcome short communications documenting a succinct but clear and important advance.1. Original research articles should report highly significant innovative results not previously published elsewhere. Original articles are limited to 7,000 words per article (all text excluding tables and figure legends).2. Short Communications need not be formally structured as full papers but should describe significant new findings and observations. The manuscript should ideally contain no more than 4Figures/Tables and 3000 words. The abstract should be limited to 200 words.3. Methods Reports should contain descriptions of novel or newly-optimised methods with broad applicability to molecular parasitologists. The manuscript should ideally contain no more than 4 Figures/Tables and 3000 words. Results and Discussion are usually combined. The abstract should be limited to 200 words. Methods Reports must include a detailed step-by-step protocol and/or analysis code in the supplementary material.4. Review articles should cover subjects falling within the scope of the journal which are of active current interest. They may be submitted or invited by the Editors. Review articles should include insightful recommendations for future directions needed for achieving public health impacts. Review articles are limited to 15,000 words per article (all text excluding tables and figure legends). If you have a suggestion for a Review article topic please email Special Content Editor, Geoff Gobert: [email protected]. Perspective articles should include scientifically backed points of view regarding currently relevant, controversial or future-oriented topics pertinent to the scope of MBP. Note that only outlining recent advances in a given field is not acceptable for a Perspective article. Besides stimulating scientific discussion or future research, perspective articles should provide a novel conceptual framework for an old or timely issue. The authors should outline which research directions should be prioritized and highlight specific points explaining why they should be prioritized in future research. Perspective articles are limited to 6,000 words per article (all text excluding tables and figure legends).6. Letters to the Editor offering comment or useful critique on material published in the journal are welcome. Letters on "hot topics" are also welcome. Note that Letters to the Editors will also be externally reviewed but the decision to publish submitted letters rests with the Editors in Chief. A goal is to publish constructive letters that will permit an exchange of views which will be of benefit to both the journal and its readers. Letters to the Editor are limited to 2,000 words per article (all text excluding tables and figure legends).Most downloaded papersBenefits to authors We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services .Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center

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