Bioinformatics for Everyone
- 1st Edition - September 20, 2021
- Latest edition
- Authors: Mohammad Yaseen Sofi, Afshana Shafi, Khalid Z. Masoodi
- Language: English
Bioinformatics for Everyone provides a brief overview on currently used technologies in the field of bioinformatics—interpreted as the application of information science to biolog… Read more
Bioinformatics for Everyone provides a brief overview on currently used technologies in the field of bioinformatics—interpreted as the application of information science to biology— including various online and offline bioinformatics tools and softwares. The book presents valuable knowledge in a simplified way to help students and researchers easily apply bioinformatics tools and approaches to their research and lab routines. Several protocols and case studies that can be reproduced by readers to suit their needs are also included.
- Explains the most relevant bioinformatics tools available in a didactic manner so that readers can easily apply them to their research
- Includes several protocols that can be used in different types of research work or in lab routines
- Discusses upcoming technologies and their impact on biological/biomedical sciences
Graduate students using bioinformatics to deal with research data
1. Prologue to bioinformatics2. Advances in DNA sequencing3. Bioinformatics databases and tools4. Nucleic acid sequence databases5. Pairwise sequence alignment6. Multiple sequence alignment7. Multiple sequence alignment tools - software and resources8. CLUSTALW software9. Plant genomic data and resources at NCBI10. NCBI BLAST11. BLAST: protocols12. ExPASy portal13. Primer designing tools14. Primer designing for cloning15. Restriction analysis tools16. Restriction analysis using NEBcutter17. KEGG database18. Database for annotation, visualisation and integrated discovery19. Genome analysis browsers20. Next-generation alignment tools21. Molecular marker storage databases and data visualisation22. Introduction to computer-aided drug design23. BioEdit in bioinformatics
- Edition: 1
- Latest edition
- Published: September 20, 2021
- Language: English
MS
Mohammad Yaseen Sofi
Mohammad Yaseen Sofi is a PhD scholar at Division of Plant Biotechnology, SKUAST- K. He completed his Bachelor's degree from SKUAST-K in 2018. He is currently working under the guidance Dr. Khalid Z. Masoodi on bioprospecting and DNA barcoding of Kale (Brassica oleracea var Acephala). In the course of his MSc programme, he made outstanding contributions in rice research in the field of Plant Biotechnology. He has filed one US patent application in 2021. Additionally, he has extensive knowledge of bioinformatics analysis tools, which he acquired while attending various national/international seminars and workshops.
Affiliations and expertise
PhD Student, Transcriptomics Lab (K-Lab), Division of Plant Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, J&K, IndiaAS
Afshana Shafi
Afshana Shafi did her Bachelors from SKUAST-K, followed by Masters in Plant Biotechnology from SKUAST-Kashmir, Shalimar, J&K, India. Currently, she is pursuing Ph.D from Division of Plant Biotechnology, SKUAST- K, on "Mining and Expression Analysis of Differentially Expressing Genes between selected scab resistant and susceptible apple (Malus domestica Borkh) cultivars” under the guidance of Dr Khalid Masoodi. She conducted an extensive study on Expression Profiling of Near-Isogenic Lines (NILs) Carrying Blast Resistance Genes Pi9 and Pi54 in the Background of Rice Cultivar Mushk Budji as part of her MSc research programme. From achieving the twentieth position in the state of J&K during her tenth board examination to achieving the first rank during her bachelor's programme, she has always been a meritorious student with an outstanding academic and extracurricular record. In 2017-18, she was awarded with BSc. merit scholarship by SKUAST-K. Additionally during the MSc programme Afshana Shafi has obtained second position. Moreover, she has a strong hold on a variety of bioinformatic analytic softwares, which she acquired throughout her studies in the field of Biotechnology and bioinformatics.
Affiliations and expertise
PhD Student, Transcriptomics Lab (K-Lab), Division of Plant Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, J&K, IndiaKM
Khalid Z. Masoodi
Dr. Khalid Zaffar Masoodi is a young scientist who works as an Assistant Professor in the Division of Plant Biotechnology at the Sher-e Kashmir University of Agricultural Sciences and Technology in Kashmir (India). He holds a Master's degree in Biotechnology and a doctorate in Plant Biotechnology. Dr. Masoodi is the recipient of numerous awards, including the SERB Early Career Research Award 2016, the SBUR Travel Award in the United States of America in 2012, and the Society of Endocrinology Journal Award in 2018 at Glasgow United Kingdoms. Dr. Masoodi has a distinguished academic record, having qualified for the CSIR-UGC net in Life Sciences, the DBT-BET JRF, and the Graduate Aptitude Test in Engineering and Sciences (GATE) while doing his Masters in Biotechnology. Dr. Masoodi has filed Six patent applications in last 2 years, has over 12 years of teaching and research experience, and has published numerous scientific articles in the fields of cancer research, human disease research, and biotechnology research. His laboratory (Transcriptomics Laboratory, often known as K-Lab, after the Klenow fragment) at SKUAST-K is fully equipped with fluorescence imaging, real-time PCR, cell culture, and Western blotting including other state-of-the-art equipment. His research interests span multiple dimensions, including transcriptomics of plant stress biology (biotic/abiotic) and cancer biology. Apart from that, he is extensively involved in the research of new drugs from medicinal plants. Additionally, he is a co-author of Advanced Molecular Biology and Biotechnology Methods (Academic Press, 2020).
Affiliations and expertise
Assistant Professor/Junior Scientist at the Division of Plant Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, IndiaRead Bioinformatics for Everyone on ScienceDirect