
Rhizomicrobiome in Sustainable Agriculture and Environment
- 1st Edition - October 18, 2024
- Imprint: Academic Press
- Editors: Joginder Singh Panwar, Vikas Sharma
- Language: English
- Paperback ISBN:9 7 8 - 0 - 4 4 3 - 2 3 6 9 1 - 4
- eBook ISBN:9 7 8 - 0 - 4 4 3 - 2 3 6 9 2 - 1
Rhizomicrobiome in Sustainable Agriculture and Environment explores the important potential of biocontrol agents in the reduction of overexploitation of synthetic pesticide… Read more

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Request a sales quoteRhizomicrobiome in Sustainable Agriculture and Environment explores the important potential of biocontrol agents in the reduction of overexploitation of synthetic pesticides, enhancing crop production, and maintaining the natural texture and health of agricultural soils. As concerns about sustainable production challenge current practices, this book presents opportunities for utilizing biological systems as part of the solution. Written by a team of global experts, sections explore the full range of rhizomicrobiome topics, including sustainable agriculture, food security, and environmental management. This will be a valuable resource for researchers, academics, and advanced students.
Rhizomicrobiome is a significant part of plant biological system which impacts the plant growth and survival in different physiological conditions. Its composition includes different microbial networks whose presence is mainly impacted by the root exudates. Archaea, bacteria, protozoa, fungi, oomycetes, nematodes, microarthropods etc. are the significant parts of the rhizomicrobiome. Rhizomicrobiome could be that novel ecosystem housing the bioinoculants that can help create sustainable, productive growth environments.
- Introduces the latest advancement in the sustainable agricultural practices, microbial biocontrol, and environmental management
- Presents the prospects of, wide applications of, traditional uses of, and modern practices of harnessing the potential of rhizomicrobiome
- Includes informative illustrations of recent trends of phyto and soil microbiome
Researchers at universities, scientists and students, industries, and government agencies interested in microbial biotechnology/bioprocess engineering, rhizomicrobiome, sustainable agriculture, food producing plants, Researchers and students in disciplines related to microbial biotechnology
- Title of Book
- Cover image
- Title page
- Table of Contents
- Copyright
- Contributors
- Chapter 1. Rhizomicrobiome: Biodiversity and functional annotation for agricultural sustainability
- Introduction
- Biodiversity of rhizomicrobiome
- Mechanisms of plant growth promotion
- Rhizomicrobiome as biofertilizers
- Nitrogen fixation
- Phosphate solubilization
- Potassium solubilization
- Zinc solubilization
- Manganese solubilization
- Rhizomicrobiome as biocontrol agents
- Siderophores production
- Hydrolytic enzymes production
- Hydrogen cyanide production
- Ammonia production
- Antibiotics production
- Rhizomicrobiome as phytostimulators
- Auxins production
- Cytokinins production
- Gibberellins production
- Rhizomicrobiome as stress alleviators
- Osmolytes
- 1-aminocyclopropane-1-carboxylate deaminase
- Antioxidants
- Effect of inoculating rhizomicrobiome in crops
- Conclusions
- Chapter 2. Rhizomicrobiome interactions fluxes and its various significance
- Introduction
- Interkingdom signaling in plant-rhizomicrobiome interactions
- Conclusions
- Chapter 3. Rhizomicrobiome – characterization and potential applications
- Introduction
- Factors affecting the composition and dynamics of RM
- Plant-factors
- Soil factors
- Characterization of RM
- Conventional/culture dependent methods
- Microbial count analysis
- Carbon source utilization profiling (CSUP)
- Fluorescence microscopy (FM)
- Fatty acid methyl esters (FAMEs)
- Advanced/culture independent methods
- PCR-independent approaches
- PCR-dependent approaches
- Functional genomics
- Metagenomics (MG)
- Meta-transcriptomics (MT)
- Meta-proteomics (MP)
- Applications of RM research in basic- and applied-sciences
- Basic sciences
- The structure, function and dynamics of the microbiome
- Microbial ecology and evolution studies
- Microbial interaction studies
- Host-microbe coevolution studies
- The development of research tools and methods
- Improving crop yields
- Soil health and restoration
- Understanding the plant-host defense system
- Biocontrol of plant pathogens
- Ecological restoration
- Applied sciences
- Informed plant breeding
- Sustainable agriculture
- Bioremediation
- Phytoremediation
- Biofertilizers and microbial inoculants
- Biotechnology and bio prospecting
- Conclusions
- Chapter 4. Tools and technique to explore rhizomicrobiomes
- Background
- Rhizosphere: narrow region expanding microbial activity
- Bacteria in rhizosphere
- Abundance and diversity
- Colonization and competence
- Distribution along the rhizosphere microsites
- Classical molecular techniques in the study of bacteria in the rhizosphere
- Fingerprinting techniques
- Quantitative PCR (qPCR) and gene expression
- Microarray and transcriptome
- Biosensors
- Proteomics
- Post‒genomic techniques in the study of bacteria in the rhizosphere
- Metagenomics
- Metagenomics
- Metatranscriptomics
- Conclusions and perspectives
- Chapter 5. Rhizomicrobiome interactions: Fundamentals and recent advances
- Introduction
- Root-soil interactions mediated by soil-microorganisms
- Rhizomicrobiome: Microbial complexity and interactions
- Intercommunications among rhizomicrobiome
- Plant microbe signaling and hormonal communications
- Chemical messengers released by the host plants
- Advantageous rhizomicrobiome strategies: Symbiotic development through signal mediation
- Mycorrhizal symbiotic development
- Legume-rhizobial symbiosis
- Interplay between the host with phytopathogens
- Improvement of rhizomicrobiome interactions
- Application of PGPR
- Growth of living multch
- Conclusions and challenges
- Chapter 6. Biodiversity and biotechnological applications of rhizomicrobiome for agricultural, environmental and industrial sustainability
- Introduction
- Functional diversity of rhizomicrobiomes
- Nitrogen fixers
- Phosphorus solubilizers
- Potassium solubilizers
- Zinc solubilizers
- Siderophore producers
- Phytohormone producers
- Auxins
- Cytokinins
- Gibberellins
- Lytic enzyme producers
- Chitinase
- Proteases
- Cellulases
- Glucanses
- Ammonia producers
- Biotechnological applications of rhizomicrobiomes
- Agricultural applications
- Biofertilizers
- Biopesticides
- Stress mitigators
- Environmental applications
- Bioremediation
- Industrial applications
- Conclusion
- Chapter 7. Sustainable use of rhizomicrobiome in managing abiotic stress
- Introduction
- Role of rhizomicrobiome in plant growth and yield
- Role of rhizomicrobiome in drought stress
- Role of rhizomicrobiome in salt stress
- Rhizomicrobiome aid – Plants survival in extreme temperatures
- Role of rhizomicrobiome during heavy metal stress
- Role of rhizomicrobial VOC's (volatile organic compounds) in plants
- Enhanced photosynthetic efficiency via rhizomicrobial VOC's
- Adequate nutrient acquirement via rhizomicrobial VOC's
- Modulated phytohormonal communication pathways
- Solubilization of available nutrients via rhizomicrobiome
- Rhizomicrobiome as biocontrol agents
- Role of rhizomicrobiome in agricultural allied sectors
- Conclusion and future perspectives
- Chapter 8. Biocontrol of weeds and their impacts on rhizomicrobiome
- Introduction
- Concept of biocontrol of weeds and sustainable agricultural growth
- Control of weeds
- Importance of rhizomicrobiome on plant growth, nutrient uptake and disease suppression
- Plant growth
- Nutrient uptake
- Disease suppression
- Biocontrol of weeds
- Use of insects, pathogens and other natural enemies
- Advantages of biocontrol against traditional chemical herbicides
- Importance of integrating different control strategies for effective weed management
- The rhizomicrobiome
- The rhizomicrobiome and its components including bacteria, fungi, archaea and viruses
- Indirect effects of biocontrol on rhizomicrobiome
- Biocontrol agents indirectly influence the rhizomicrobiome through their impact on weed communities
- Competition for resources (water, nutrients, and space) between weeds and desirable plants and how biocontrol agents can alleviate this competition
- Positive effects of reduced weed competition on the growth and activity of beneficial rhizomicrobes
- Direct effects of biocontrol on rhizomicrobiome
- Biocontrol agents, particularly microbial organisms, can establish themselves in the rhizosphere and interact with resident microorganisms
- Potential mechanisms of interaction, such as nutrient competition, production of antimicrobial compounds, and induction of systemic resistance in plants
- Disruption of weed-microbe interactions
- Specific interactions between weeds and rhizomicrobes that influence weed growth and competitiveness
- Biocontrol agents can disrupt these interactions, leading to changes in the composition and activity of the rhizomicrobiome
- Potential consequences of disrupted weed-microbe interactions on plant health, nutrient availability, and ecosystem dynamics
- Case studies and experimental evidence
- Case studies and experimental evidence that investigate the impact of biocontrol of weeds on the rhizomicrobiome
- Findings, including changes in rhizomicrobiome composition, microbial diversity, and functional dynamics
- Highlight the importance of considering specific biocontrol agents, target weeds, and environmental conditions when assessing the impact on the rhizomicrobiome
- Future perspectives and challenges
- Outlook on the future of biocontrol of weeds and its impact on the rhizomicrobiome
- Need for further research to fully understand the mechanisms and long-term effects of biocontrol on the rhizomicrobiome
- Highlight the importance of developing integrated approaches that optimize biocontrol strategies while minimizing unintended consequences
- Conclusion
- Emphasize the importance of considering the impact of biocontrol of weeds on the rhizomicrobiome for sustainable weed management practices
- Call for continued research and collaboration to enhance our understanding of these complex interactions
- Chapter 9. Involvement of soil parameters and rhizosphere microbiome in sustainable crop productivity
- Introduction
- Microbial role in soil-crop quality enhancement
- Role of PGPR
- Phosphate solubilization
- Nitrogen fixation
- Siderophore production
- HCN generation
- Phytohormone production
- Vitamins
- ACC deaminase
- Antibiotics
- Extracellular enzymes
- Mycorrhizal role in crop health promotion
- Mechanism
- Role of algae in crop production
- Benefits
- Biofertilisers
- Prevent soil erosion and act as soil conditioners
- Plant hormone mimicking compounds
- Against pests
- Heavy metal removal
- Other benefits
- Mechanism
- Role of other beneficial fungi in crop production
- Microbial associations with nodule-forming plants
- Conclusion
- Chapter 10. Role of rhizomicrobiome in in-situ and ex-situ conservation of plant community
- Introduction
- Rhizomicrobiome and its importance for plant community
- Role of rhizomicrobiome in the conservation of plants
- In-situ conservation of plant community
- Enhancement of nutrient availability
- Growth-promoting activities
- Mitigation of abiotic stress
- Mitigation of biotic stress
- Decontamination of the toxic soil environment
- Ex situ conservation of plant community
- Conclusions
- Chapter 11. Role of rhizomicrobiome in plant disease management
- Introduction
- Rhizomicrobiome: unveiling its potential
- Reprograming of plant physiology by rhizomicrobiome
- Role in biotic stress mitigation
- Role in the management of plant diseases
- Competition
- Antagonism
- Hyperparasitism
- Different mechanisms of action of the beneficial rhizomicrobiome for plant disease management
- Role in the management of insect pests
- Commercial formulations of rhizobiota
- Formulations of rhizomicrobiome
- Talc-based formulations
- Peat-based formulations
- Vermiculite-based formulations
- Commercialization of rhizomicrobiome formulations
- Commercial formulations for plant disease management
- Challenges and opportunities
- Future prospects
- Conflict of interest
- Chapter 12. Rhizomicrobiome as a potential reservoir of heavy metal resistant microorganisms
- Introduction
- Toxic effects of HMs
- On aquatic environment
- On humans
- On plants
- Sources of HMS
- HM-resistant microbes
- Effects of HMS on the environment
- Arsenic
- Cadmium
- Lead
- Mercury
- Chromium
- Mechanism involved in HMs tolerance
- Metal exclusion by permeability barrier
- Active transport of the metal away from the microorganism
- Intracellular sequestration of metals by protein binding
- Extracellular sequestration
- Enzymatic detoxification of a metal to a less toxic form
- Reduction in metal sensitivity of cellular targets
- Precipitation
- Oxidation/reduction
- Methylation/demethylation
- Application of HMs resistant microbes
- Discussion
- Conclusion
- Chapter 13. Rhizomicrobiome: Role in management of heavy metal stress in plants
- Introduction
- Rhizosphere and microbial association
- Mechanisms of rhizospheric microbes assisted phytoremediation
- EPS production and metal immobilization and remediation
- Siderophore producing rhizobacteria mediated bioremediation
- Metallothionein-assisted phytoremediation
- Metal remediation by crop plants by crop plants
- Mycorrhizae and other fungus-associated phytoremediation
- Conclusions
- Abbreviations
- Chapter 14. Applications of rhizomicrobiome in bioremediation and assisted phytoremediation
- Introduction to rhizomicrobiome and bioremediation
- Understanding the role of rhizomicrobes in bioremediation processes
- Harnessing the power of rhizomicrobiome for environmental cleanup
- Enhanced biodegradation and biostimulation
- Rhizofiltration and phytoremediation
- Enhanced phytoextraction
- Microbial communities for enhanced remediation
- Case studies: successful applications of rhizomicrobiome in bioremediation
- Enhancing phytoremediation with rhizomicrobiome assistance
- Enhanced biodegradation of contaminants
- Phytostimulation for improved plant health
- Enhanced metal uptake and immobilization
- Bioaccumulation and rhizoaccumulation
- Mechanisms of rhizomicrobiome-assisted phytoremediation
- Enhanced contaminant biodegradation
- Improved nutrient uptake and plant health
- Facilitated metal uptake and immobilization
- Rhizoaccumulation and bioaccumulation
- Synergistic approaches: integrating rhizomicrobiome with plant genetics
- Plant selection and engineering for enhanced rhizomicrobiome interactions
- Engineering plant traits for enhanced phytoremediation
- Optimizing microbial consortia for plant-microbe interactions
- Targeted enhancement of plant stress tolerance
- Challenges and limitations of rhizomicrobiome-based bioremediation strategies
- Rhizomicrobiome variability and complexity
- Limited understanding of rhizomicrobiome function
- Inconsistent performance
- Limited application to specific contaminants
- Potential ecological risks
- Future prospects and emerging technologies in rhizomicrobiome bioremediation
- Precision engineering of rhizomicrobiomes
- Omics technologies for rhizomicrobiome analysis
- Synthetic biology approaches
- Engineered microbial biofilms
- Multifunctional plant-microbe partnerships
- Chapter 15. Rhizomicrobiome as a potential source of microbial inoculants for use in in vitro biotization mediated acclimatization of micropropagated plants
- Introduction
- Role of microbial interactions in addressing acclimatization challenges
- The rhizomicrobiome: understanding plant-microbe interactions
- Composition of the rhizomicrobiome
- Exploration of symbiotic and mutualistic relationships
- Significance of symbiosis and mutualism in plant health
- Microbial inoculants for in vitro biotization
- Identification and isolation methods for beneficial rhizomicrobes with potential application in micropropagated plant acclimatization
- Considerations for microbial diversity and strain specificity in the inoculant formulation
- Mechanisms of rhizomicrobiome-mediated plant acclimatization
- Application of rhizomicrobiome inoculants in vitro biotization
- Techniques for inoculant application
- Evaluation methods for assessing the effectiveness of rhizomicrobiome-based inoculants on plant acclimatization
- Future perspectives and challenges
- Overcoming challenges through research and innovation
- Chapter 16. Rhizomicrobiome: Applications of secondary metabolite/bioactive of industrial importance
- Introduction
- Secondary metabolites
- Secondary metabolites isolated from rhizomicrobiomes
- Plant microbiome: source for active compounds
- Kakadumicins
- Javanicin
- Aminoglycoside
- Aristeromycin
- Cervinomycin
- Friulimicins
- Pyrrolnitrin
- Streptotricin
- β-hydroxybutyrate
- β-lactams
- Elaboration of root exudates from rhizobacterial activities
- Pseudomonas spp.
- Bacillus spp.
- Conclusions
- Chapter 17. Applications and importance of metagenomic studies for exploring rhizomicrobiome dynamics
- Introduction
- Plant-microbe interactions in rhizosphere microenvironment
- Metagenomics and multi-omics technologies
- Rhizomicrobiome metagenomics studies on different plants
- Metagenomics of rhizosphere: Challenges and constraints
- Conclusion or future prospective
- Chapter 18. Computational approaches to understand rhizomicrobiome community and its future implications
- Introduction
- Computational approaches in rhizomicrobiome analysis
- Databases and resources for microbial interaction data
- Data preprocessing
- Taxonomic profiling
- Functional profiling
- Differential abundance analysis
- Network analysis to explore microbial interactions
- Metagenome assembly
- Machine learning techniques for predictive modeling
- Random forest
- Support vector machines (SVM)
- Gradient boosting
- Neural networks
- K-nearest neighbors (K-NN)
- Regularized regression (e.g., lasso, ridge)
- Feature selection techniques
- Integrative approaches to combine multi-omics data
- Data integration
- Pathway analysis and enrichment
- Multiomics clustering
- Canonical correlation analysis (CCA)
- Joint dimensionality reduction
- Bayesian approaches
- Statistical analysis
- Visualization
- Ethics and safety considerations in manipulating the rhizomicrobiome
- Future implications of rhizomicrobiome research
- Chapter 19. Role of modern techniques for revealing chemical signatures of rhizomicrobiome
- Introduction
- Rhizospheric signaling
- Rhizosphere engineering
- Plant based engineering
- Rhizomicrobiome based engineering
- Genome-wide association
- Quantitative trait locus
- CRISPR-Cas technology
- Horizontal gene transfer method
- Recombinant Inbred lines
- Inoculation of consortia
- Microbiome transplantation
- Transcriptomics, metagenomics and omics approaches
- Soil based engineering
- Soil amemdments by organic farming
- Soil amendments by nanotechnology
- Significance of chemical signatures of rhizomicrobiome
- Conclusion and future prospects
- Chapter 20. Role of rhizobiome in biosynthesis of secondary metabolites of industrial importance
- Introduction
- Classification of SM
- Alkaloids
- Terpenoids
- Phenolics
- Limitations to produce secondary metabolites
- Enhancing secondary metabolite production
- Secondary metabolite production enhancement via rhizomicrobiome
- Rhizospheric microbiome
- Phyllospheric microbiome
- Endospheric microbiome
- Impact of environmental variables on plant microbiome
- Plant microbiomes contribute to the productions of PSMs
- Conclusion
- Chapter 21. Rhizomicrobiome as potential agents used against polyaromatic hydrocarbons contaminated soils for plants
- Introduction
- Phytotoxicity of petroleum hydrocarbons on plants and soil
- The impact of PAHs contamination on the soil properties
- Toxic impacts of PHs on plants
- Impacts on seed germination
- Impacts on growth, yield, and biochemical properties
- Adsorption, absorption and accumulation of PAHs by plants
- Adsorption
- Absorption
- Accumulation
- Detoxification of PAHs by plants
- Rhizomicrobiome bioremediation of polycyclic aromatic hydrocarbons (PAHs)
- Plant root exudates
- Enzymes degrading-hydrocarbon
- Microbiome-driven rhizoremediation for hydrocarbon cleanup
- Bioaugmentation (in-situ strategy)
- Bioventing (in-situ strategy)
- Biostimulation (ex-situ strategy)
- Factors affecting the bioremediation mechanism of PAHs by microorganisms
- Structure and physicochemical properties of PAHs
- Environmental factors
- Conclusions
- Chapter 22. Rhizomicrobiome diversity and role in treating infectious disease
- Introduction
- Intercommunication among rhizomicrobiome
- Quorum sensing and performance of bacterial communities
- Quenching of quorum-sensing signaling
- Plant-microbe signaling
- Chapter 23. Synergistic interplay: unraveling the significance of the rhizomicrobiome in mitigating heavy metal stress in plants
- Introduction
- Heavy metals (HMs)
- Heavy metal toxicity
- Microorganisms
- Relationship between plant and microbes in the rhizosphere and mitigation of heavy metal stress
- Plants with heavy metal signaling and tolerance
- Microbial strategies for heavy metal (HM) remediation
- Biosorption
- Biomining (bioleaching and bio-oxidation)
- Extracellular and intracellular sequestration
- Biotransformation
- Volatilization
- Extracellular polymeric substances (EPS)
- Sidephores and biosurfactants
- Microbial enzymatic reduction
- Plant microbial remediation
- Conclusion
- Chapter 24. Rooting for resilience: Harnessing the rhizomicrobiome for abiotic stress survival in plants
- Introduction
- Plants, microbes interaction in rhizosphere
- Classification of soil rhizomicrobiome
- Soil bacteria
- Soil fungi
- Mycorrhizae
- Nematodes
- Protozoa
- Rhizomicrobiome induced systematic tolerance (IST) under abiotic stress
- Drought stress
- Role of rhizomicrobiome in drought stress alleviation
- Salinity stress
- Role of rhizomicrobiome in salt stress alleviation
- Heavy metal stress
- Alleviation of heavy metal stress by rhizomicrobiome
- Heat/cold stress increased synthesis
- Alleviation of heat/cold stress by rhizomicrobiome
- Conclusion and future perspective
- Index
- Edition: 1
- Published: October 18, 2024
- Imprint: Academic Press
- No. of pages: 576
- Language: English
- Paperback ISBN: 9780443236914
- eBook ISBN: 9780443236921
JP
Joginder Singh Panwar
VS