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Proteomics Mass Spectrometry Methods
Sample Preparation, Protein Digestion, and Research Protocols
- 1st Edition - February 13, 2024
- Editor: Paula Meleady
- Language: English
- Paperback ISBN:9 7 8 - 0 - 3 2 3 - 9 0 3 9 5 - 0
- eBook ISBN:9 7 8 - 0 - 3 2 3 - 9 0 6 5 2 - 4
Proteomics Mass Spectrometry Methods: Sample Preparation, Protein Digestion, and Research Protocols shares best practices collected across key laboratories and core facilitie… Read more
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Request a sales quoteProteomics Mass Spectrometry Methods: Sample Preparation, Protein Digestion, and Research Protocols shares best practices collected across key laboratories and core facilities, taking the reader through key tactics for executing the most usual mass spectrometry experiments. Sections review research making use of MS proteomics experiments, focus on critical sample preparation, cover mammalian cell lines and samples from clinical tissue and biological fluids, discuss subcellular fractionation, provide methods for protein digestion both for in gel and in solution, and delve into key MS proteomics analysis protocols, including label-free LC-MS, TMT and iTRAQ labelled LC-MS, phosphorylation enrichment, ubiquination enrichment, and more. This book is the perfect lab manual for research teams or for use as a new staff training material. Core facility managers may also find it useful for sharing best practices with their staff and researchers.
- Explores the most common questions new researchers have
- Guides readers to properly design the workflow for successful integration of mass spectrometry into protein biochemical analyses
- Provides examples of sample preparation for a number of different materials, mammalian cells, and others
Section I. Introduction
1. Book introduction
2. MS Proteomic Overview
Section II. Sample Preparation
3. Sample preparation from mammalian cell lines
4. Sample preparation for proteomics and MS from clinical tissue
5. Sample preparation for proteomics and MS from biological fluids, e.g. serum/plasma from patient blood
6. Sample preparation for proteomics and MS from bacterial and fungal samples
7. Sample preparation for proteomics and MS from urine samples including exosome isolation
8. Sample preparation for proteomics and MS from animal samples
9. Subcellular fractionation methods for proteomic analysis
Section III. Protein Digestion
10. In gel digestion for mass spectrometry
11. In solution digestion for mass spectrometry
Section IV. MS Proteomic Analysis Protocols
12. Protocols for Label-free LC-MS/MS proteomic analysis
13. Protocols for TMT labelled LC-MS/MS analysis
14. Phosphorylation enrichment for phosphoproteomic analysis
15. Ubiquitination enrichment for ubiquitinome PTM analysis
16. Glycosylation enrichment and analysis
17. LC-MS for protein identification and PTM analysis (e.g. methylation)
- No. of pages: 350
- Language: English
- Edition: 1
- Published: February 13, 2024
- Imprint: Academic Press
- Paperback ISBN: 9780323903950
- eBook ISBN: 9780323906524
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Paula Meleady
Dr. Meleady received her degree in Biotechnology from the Dublin City University and PhD from the National Cell and Tissue Culture Centre. She is currently Senior Research Scientist, Programme Leader, Proteomics Core Facility, and Associate Director National Institute for Cell Biology.
Affiliations and expertise
Senior Research Scientist, Programme Leader, Proteomics Core Facility; Associate Director National Institute for Cell Biology, IrelandRead Proteomics Mass Spectrometry Methods on ScienceDirect