MicroRNA Advances and Application in Plant Biology
- 1st Edition - November 27, 2024
- Imprint: Academic Press
- Editors: Rahul Datta, Meenakshi Sharma, Sachidanand Singh
- Language: English
- Paperback ISBN:9 7 8 - 0 - 4 4 3 - 2 1 6 8 2 - 4
- eBook ISBN:9 7 8 - 0 - 4 4 3 - 2 1 6 8 3 - 1
MicroRNA Advances and Application in Plant Biology presents a broad range of tools and techniques used for microRNA identification and utilization for diversity analysis in plants… Read more
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Request a sales quoteMicroRNA Advances and Application in Plant Biology presents a broad range of tools and techniques used for microRNA identification and utilization for diversity analysis in plants, crop improvement, and gene regulation. With expert insights, this book addresses those concepts through curated chapters that are well-illustrated with informative data, tables, figures, and photographs. While biological microRNA database resources have been created for the better understanding of structural and functional properties of primary-microRNAs (pri-microRNAs) to mature microRNAs, there remains a need for foundation understanding of how microRNAs may play a very crucial role in a plant lifecycle as an regulatory and stress tolerance molecule.
There are still many unanswered questions about the structural and functional properties of the microRNAs, like the role of microRNA in crop improvement, gene regulation, stress tolerance, disease resistance plant, plant communication, and environmental interaction.
- Explains the role of microRNA in biotic and abiotic stress tolerance in horticultural crops
- Includes both foundational and more advanced information on MicroRNAs in plants
- Incorporates detailed information on specific microRNA (or non-coding RNA) gene networks in plant species
Researchers, academics and advanced level undergraduate students in plant science, plant biology, molecular biology, Botanists
- Title of Book
- Cover image
- Title page
- Table of Contents
- Copyright
- Contributors
- Chapter 1. Plant microRNAs: An overview
- 1 Introduction to MicroRNAs (miRNAs)
- 1.1 MicroRNAs (miRNAs)
- 1.2 Small interfering RNAs (siRNAs)
- 1.3 PIWI-interacting RNAs (piRNAs)
- 1.4 Transfer RNA-derived small RNAs (tsRNAs)
- 2 miRNA biogenesis
- 2.1 Transcription of plant miRNA genes
- 2.1.1 Polycistronic miRNAs
- 2.2 Stabilization of pri-miRNAs in plants
- 2.3 Pr-miRNA processing or DROSA-DGCR8 complex processing
- 2.3.1 Dicing complex assembly
- 2.3.2 Regulation of pri-miRNA processing
- 2.3.3 Secondary structures of pri-miRNAs
- 3 miRNA maturation
- 3.1 Pre-miRNAs export to the cytosol
- 3.2 miRNA stabilization and RISC assembly
- 3.3 miRNA strand selection and loading of miRNA onto AGO
- 4 Regulation of microRNA (miRNA) genes transcription
- 4.1 Developmental stages regulate the transcription of MIR genes
- 4.2 Epigenetic regulation of MIR gene transcription
- 4.3 Hormonal regulation and MIR gene expression
- 4.4 Feedback regulation and MIR gene expression
- 4.5 Environmental regulation and MIR gene expression
- 5 Plant miRNA and gene knockdown, gene silencing and artificial microRNAs (amiRNAs)
- 6 Biological function of miRNA in plants
- 6.1 Gene expression regulation
- 6.2 Developmental processes
- 6.3 Leaf development and senescence
- 6.4 Root development
- 6.5 miRNA role in reproductive processes
- 7 miRNA and stress response
- 7.1 Biotic stress response
- 7.2 Abiotic stress response
- 8 Future perspectives and conclusion
- Chapter 2. What are microRNAs, their origin and functions in plants?
- 1 Introduction
- 2 What are microRNAs?
- 3 Biosynthesis of microRNAs in plants
- 3.1 Approaches for identification of miRNA of plants
- 4 Functions of microRNAs in plants
- 4.1 Growth and development
- 4.2 Abiotic stress tolerance
- 4.2.1 Cold and heat stress tolerance
- 4.2.2 Drought stress tolerance
- 4.2.3 Salt stress tolerance
- 4.2.4 Heavy metal stress tolerance
- 5 Applications of microRNAs in improvement of crops
- 6 Conclusions and future prospects
- Conflict of interest
- Chapter 3. Genetic modification of plants using microRNAs
- 1 Introduction
- 1.1 miRNA
- 1.2 Biosynthesis of micro RNA and their mode of action
- 1.3 Regulatory function of miRNAs in plants
- 2 Techniques for miRNA gene manipulation
- 2.1 Gain-of-function analysis techniques
- 2.2 Loss-of-function analysis technique
- 3 Conclusion
- 4 Future scope
- Chapter 4. Plant development: What role do microRNAs play?
- 1 Introduction
- 2 Identification of plant microRNAs
- 3 Origin and diversity of miRNAs in plants
- 4 Biogenesis of microRNAs
- 5 Mechanism of mi RNA gene regulation in plants
- 6 miRNA role in plant development
- 6.1 miRNA-regulated SAM development
- 6.2 miRNA-mediated postembryonic shoot meristem regulation
- 6.3 miRNAs and leaf development
- 6.4 miRNAs and root system development
- 6.5 Plant floral transitions and their miRNAs
- 6.6 miRNA and vascular development
- 7 Conclusion and future prospects
- Chapter 5. Root architecture and microRNAs: A key role for microRNAs
- 1 Introduction
- 2 Root architecture
- 3 Characteristics of microRNAs
- 4 Role of miRNAs in gene regulation
- 5 Mechanisms of miRNA-mediated gene regulation
- 6 Importance of miRNAs in plant development
- 7 The role of microRNAs in regulating root architecture
- 8 Molecular mechanisms underlying miRNA-mediated regulation of root architecture
- 9 Interactions between miRNAs and other regulatory factors in shaping root architecture
- 10 Experimental approaches to studying MicroRNA regulation of root architecture
- 11 Techniques for miRNA detection and quantification
- 12 Genetic and molecular tools for studying miRNA function in root development
- 13 Applications
- 13.1 Significance of miRNA-mediated root architecture regulation in agriculture
- 14 Potential applications in crop improvement and stress tolerance
- 15 Future directions and challenges in research on miRNA-Mediated regulation of root architecture
- 16 Conclusion
- Chapter 6. Tolerance-enhancing microRNA: A new therapeutic target for plants
- 1 Introduction
- 2 Biogenesis and operational mechanism of plant based miRNA
- 3 miRNA network associated symbiotically with plant growth promoting microbes for enhanced stress response
- 4 miRNA networks and underlying mechanisms for management of abiotic stress
- 4.1 Drought stress and salinity stress
- 4.2 Thermal stress
- 4.3 Oxidative stress
- 4.4 Metal ion stress
- 4.5 Radiation stress
- 5 miRNA networks in biotic stress management
- 6 Future prospectives and conclusion
- Chapter 7. Regulatory role of microRNA in plants during development with respect to root and shoot architecture and secondary growth
- 1 Introduction
- 1.1 Involvement of candidate genes in root and shoot development
- 1.2 Importance of microRNA in plant growth
- 2 Role of microRNA in root expansion
- 2.1 miRNA involved in embryonic root elongation and primary root growth
- 2.2 miRNAs in root radial modeling and tissue differentiation
- 2.3 miRNA involved in postembryonic lateral root development
- 2.4 miRNA involved in adventitious root development
- 2.5 miRNA involved in regulatory network during root development
- 3 Role of microRNA in shoot development
- 3.1 miRNAs in shoot tissue differentiation
- 3.2 miRNA involved in embryonic shoot elongation and shoot growth
- 3.3 miRNA-mediated regulatory network during shoot development
- 3.4 Role of miRNA involved in postembryonic primary and secondary shoot branches development
- 4 Role of microRNA in secondary growth of plants
- 5 Future prospective
- 6 Conclusion
- Chapter 8. Homeostasis in plant microRNAs
- 1 Introduction
- 2 Biogenesis and assembly of miRNA
- 3 Relationship of miRNA homeostasis with NPK macronutrients
- 4 Phosphate regulation in Arabidopsis by miRNA (why only Arabidopsis?)
- 5 Copper regulation in Arabidopsis by miRNA
- 6 Iron regulation in Arabidopsis by miRNA
- 7 Sulfur regulation by miRNA
- 8 Homeostasis associated with nutrients by miRNA regulation
- 8.1 miRNAs in nutrient homeostasis
- 8.1.1 miRNA and phosphorus nutrition
- 8.1.2 miRNAs in nitrogen uptake and transport
- 8.1.3 miRNAs in sulfur homeostasis
- 8.1.4 miRNAs in copper homeostasis
- 8.1.5 miRNA in other mineral homeostasis
- 9 Biotic stress associated with miRNA
- 10 Conclusion
- Chapter 9. MicroRNA tools for gene silencing
- 1 Introduction
- 2 Transcriptional gene silencing (TGS)
- 3 RNA, biogenesis and gene silencing
- 4 Posttranscriptional gene silencing
- 4.1 RNA interference
- 4.2 CRISPR mediated gene silencing
- 4.3 Nonsense-mediated decay
- 4.4 Other tools of gene silencing
- 5 Applications and future perspectives
- 6 Conclusive remarks
- Chapter 10. Application of microRNAs in horticultural crops
- 1 Introduction
- 2 History
- 3 Biogenesis of microRNAs and its conservation
- 4 Molecular techniques for isolation and characterization
- 5 Mechanisms of microRNAs mediated gene regulation
- 6 Functional role of microRNAs
- 7 Targets of microRNAs
- 8 Application of microRNAs in horticultural plants
- 8.1 MicroRNAs regulate organ development
- 8.1.1 Flower development
- 8.1.2 Fruit development
- 8.1.3 Leaf development
- 8.1.4 Shoot development
- 8.2 MicroRNAs regulate quality change
- 8.2.1 Color
- 8.2.2 Size
- 8.2.3 Shape
- 8.2.4 Ripening
- 8.2.5 Flavor and texture
- 8.3 MicroRNAs regulate plant responses to environmental stresses
- 8.3.1 Increasing resistance to biotic stresses
- 8.3.2 Tolerance to abiotic stress
- 8.3.3 Heavy metal stress tolerance
- 9 Conclusion and future perspectives
- Chapter 11. MicroRNAs in monocot plants like rice, wheat, and sugarcane
- 1 Introduction
- 1.1 Micro RNAs and Si RNAs
- 1.2 MiRNAs in monocots
- 2 Biogenesis of microRNA in monocots
- 2.1 Biogenesis of miRNA respect to rice
- 2.2 Biogenesis of miRNA in wheat
- 3 Role of miRNA in growth and development
- 3.1 Rice
- 3.2 Wheat
- 3.3 Sugarcane
- 3.3.1 Role of miRNAs in sugarcane shoot and root development
- 3.3.2 Role of miRNAs in sugarcane flowering
- 3.3.3 Role of miRNAs in sugarcane root development
- 4 Importance of micro-RNA for tolerance to biotic stress in cereals
- 4.1 Rice
- 4.2 Wheat
- 4.3 Sugarcane
- 5 Importance of micro-RNA for tolerance to abiotic stresses in cereals
- 6 Future prospects of miRNAs in cereals
- 7 Conclusion
- Chapter 12. MicroRNAs in dicot plant like Arabidopsis
- 1 Introduction
- 2 Role of miRNA in various facets of Arabidopsis growth and development
- 3 Role of miRNA in flowering
- 4 Role of microRNA in somatic embryogenesis
- 5 Role of miRNA in biotic and abiotic stress
- 6 Conclusion
- Chapter 13. MicroRNAs in legumes and symbiotic association with rhizobacteria
- 1 Introduction
- 2 What is a microRNA (miRNA)?
- 3 Identification of miRNA in legumes
- 4 miRNAs coordinates different phases of legume–rhizobium symbiosis
- 5 Role of miRNA involved in symbiosis and nodulation
- 6 miRNAs controlling nutrient uptake and homeostasis in legumes
- 7 Conclusion
- Chapter 14. Engineered artificial MicroRNA in plant: an overview
- 1 Introduction
- 2 Why amiRNAs were needed, design and advantages?
- 3 Computational tools and resources for identifying plant miRNAs and their targets
- 4 miRNA-based biotechnology for improving plant development, fruit, and seed development as well plant biomass yield
- 5 miRNA-based biotechnology for improving plant tolerance to environmental stresses
- 6 Unique features of plant miRNAs and difficulties in annotation
- 7 Evolution of plant miRNA annotation methods and criteria
- 8 amiRNA studies in model organisms and plant immunity
- 8.1 Arabidopsis thaliana
- 8.2 Chlamydomonas reinhardtii
- 8.3 Oryza sativa
- 8.4 Physcomitrella patens
- 9 Patents updates of artificial miRNA in plants
- 10 Conclusion
- Chapter 15. Role of microRNA in plant defense
- 1 Introduction
- 2 miRNA and bacterial infection in plants
- 3 miRNA and fungal infection in plants
- 4 miRNA and viral infection in plants
- 5 miRNA in defense against insects
- 6 Conclusion
- Chapter 16. MicroRNA databases and bioinformatics analysis
- 1 MicroRNA-related repositories
- 2 Databases for structural studies of microRNAs
- 3 Databases for functional studies of miRNA
- 4 Bioinformatics analysis for microRNAs secondary structure prediction
- 5 Bioinformatics analysis for microRNAs gene prediction
- 6 Bioinformatics analysis for microRNAs target prediction
- 7 Bioinformatics analysis for microRNA related to plant secondary metabolites biosynthesis—model approach
- 7.1 Identification of microRNAs in the genome of Linum usitatissimum L.
- 7.2 Target sequences of SDG key enzymes
- 7.3 Final prediction
- Index
- Edition: 1
- Published: November 27, 2024
- No. of pages (Paperback): 420
- No. of pages (eBook): 400
- Imprint: Academic Press
- Language: English
- Paperback ISBN: 9780443216824
- eBook ISBN: 9780443216831
RD
Rahul Datta
Dr Rahul Datta is Asst. Professor in the field of Soil Science currently is working at Mendel University in Brno, Czech Republic. His research has focused largely on increasing crop productivity using “green” and sustainable methods. Some of the most notable problems he has addressed through his research are drought stress, heavy metal toxicity in soil, and climate change greenhouse gas. His research has helped in increasing the quality and productivity of staple crops like wheat maize, barley, rice, and other crops like mangoes, spinach, and cotton. His work has been cited in excess of 2200 times. He has published extensively and is an editorial board member of the journals PlosOne, Sustainability (MDPI), BMC Plant Biology and Open Agriculture, in which he is overseeing a special issue on current trends in agriculture (MDPI). At present, He is also a member of the Soil Science Society of America.
Affiliations and expertise
Department of Geology and Pedology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Czech RepublicMS
Meenakshi Sharma
Dr Meenakshi Sharma is working as an Assistant Professor in the Department of Botany and Life Sciences, Daulat Ram College, University of Delhi. She obtained her M.Phil. degree in Microbiology and Biotechnology from Department of Botany, University of Delhi, and Ph.D. degree in Microbiology and Environmental Biotechnology from the Centre for Environmental Management of Degraded Ecosystems (CEMDE) University of Delhi. She has been working as Post-Doctoral Fellow in Environmental Biotechnology Laboratory at Institute of Genomics and Integrative Biology (CSIR) Delhi. Her main areas of research are microbial biodiversity, Restoration Ecology, genomics, antimicrobial activity, Plant Growth Promoting Molecules, Siderophore and Telomerase inhibitors. She has published papers in scientific journals such as Soil Biology and Biochemistry, Plant and Soil, Journal of Basic Microbiology, Soil and Tillage Research, International Agrophysics etc. She has more than 11 years of teaching experience in plant Science, Bioinformatics, Molecular Biology and life science.
Affiliations and expertise
Assistant Professor, Department of Botany & Life Sciences, Daulat Ram College, University of Delhi, India.SS
Sachidanand Singh
Dr. Sachidanand Singh, B.Tech Biotechnology, M.Tech Bioinformatics and PhD in Bioinformatics. He has a postdoctoral research experience from college of Pharmacy, Ohio State University, USA. His specialization area includes Plant Biotechnology, Systems Biology and Drug design. He has more than 12 years of research and academic experience. He has published extensively, including on plant-based studies in association to Soil microbiome, herbal drug formulation, drug design and microbe-microbe interactions and their expression-based studies. He has served for a decade in School of Biotechnology and Health Sciences, Karunya University, Coimbatore, Tamil Nadu, India. He also worked as consultant for college of pharmacy, Ohio State University as a Statistical Genetics during the year 2018. He has published in peer reviewed journals.
Affiliations and expertise
Associate Professor, Department of Biotechnology, School of Energy and Technology, Pandit Deendayal Energy University, Gujarat, India.Read MicroRNA Advances and Application in Plant Biology on ScienceDirect