Genomics, Transcriptomics, Proteomics and Metabolomics of Crop Plants
- 1st Edition - July 11, 2023
- Imprint: Academic Press
- Editors: Azamal Husen, Altaf Ahmad
- Language: English
- Paperback ISBN:9 7 8 - 0 - 3 2 3 - 9 5 9 8 9 - 6
- eBook ISBN:9 7 8 - 0 - 3 2 3 - 9 5 9 9 0 - 2
Genomics, Transcriptomics, Proteomics and Metabolomics of Crop Plants presents current operational methods applied to model crop plants. Including subcellular organelles, DNA finge… Read more
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Request a sales quoteGenomics, Transcriptomics, Proteomics and Metabolomics of Crop Plants presents current operational methods applied to model crop plants. Including subcellular organelles, DNA fingerprinting and barcoding, sRNA, gene expression, rhizosphere engineering, marker assisted and 5G breeding, plant-microorganism interactions, stress signaling and responses, the book highlights important factors that are often overlooked and explores the latest research. The book also explores cutting-edge approaches for immediate application in new research such as OMICS, genome-wide transcriptome profiling, bioinformatics and database, DNA fingerprinting and barcoding, sRNA, gene expression, genome editing, diagnostics, rhizosphere engineering, marker assisted and 5G breeding, crop plant-microorganism interactions, stress signaling and responses.
Additionally, the book describes opportunities to manipulate crop plants genetic and metabolic systems, while also exploring the related bioethical and biosafety issues. These topics are chosen and covered in detail to fill the gap in this understanding of crop molecular biology.
- Includes coverage of the latest trends on plants bioinformatics and databases
- Presents the overall scope of OMIC sciences with rich illustration
- Provides implementation advice and future challenges
Researchers, academics and advanced level students in crop biology, agriculturally focused biotechnologists, nanobiotechnologists, and general biologists seeking translational insights
- Cover image
- Title page
- Table of Contents
- Copyright
- List of contributors
- About the editors
- Preface
- Chapter 1. Genome to phenome: bioinformatics of crop plants
- Abstract
- Chapter outline
- 1.1 Introduction
- 1.2 De novo genome assembly approach
- 1.3 Genome annotation
- 1.4 Phenotypes
- 1.5 Data analysis
- 1.6 Conclusions
- References
- Further reading
- Chapter 2. Emerging approach of transcriptomics for crop plants improvements
- Abstract
- Chapter outline
- 2.1 Introduction
- 2.2 Transcriptomic approaches applied in plants
- 2.3 Conclusion
- References
- Chapter 3. Proteomics as a tool for analyzing plant responses to abiotic and biotic stresses
- Abstract
- Chapter outline
- 3.1 Introduction
- 3.2 Proteomics’ significance for agricultural systems
- 3.3 Various proteomics approaches used in plant studies
- 3.4 Proteomics for crop improvement
- 3.5 Concerns of proteomics in plants for the next decade
- 3.6 Conclusions and prospects
- References
- Further reading
- Chapter 4. Metabolic engineering of plant primary–secondary metabolism interface
- Abstract
- Chapter outline
- 4.1 Introduction
- 4.2 Metabolic engineering
- 4.3 Primary and secondary metabolites
- 4.4 Plant metabolic engineering
- 4.5 Plant primary–secondary metabolism interface
- 4.6 Conclusion
- References
- Chapter 5. Current understanding of genomics, transcriptomics, proteomics, and metabolomics of crop plants under low nutrient stress
- Abstract
- Chapter outline
- 5.1 Introduction
- 5.2 Omics approaches for investigating nutrient response of crop plants
- 5.3 Nitrogen (N) and its response to plants at omics levels
- 5.4 Phosphorus (P) and its response to plants at omics levels
- 5.5 Potassium (K) and its response to plants at omics levels
- 5.6 Sulfur (S) and its response to plants at omics levels
- 5.7 Calcium and its response to plants at omics levels
- 5.8 Magnesium (Mg) and its response to plants at omics levels
- 5.9 Boron (B) and its response to plants at omics levels
- 5.10 Manganese (Mn) and its response to plants at omics levels
- 5.11 Iron (Fe) and its response to plants at omics levels
- 5.12 Copper (Cu) and its response to plants at omics levels
- 5.13 Other micronutrients and their responses to plants at omics levels
- 5.14 Conclusion
- References
- Further reading
- Chapter 6. Perspectives of omics and plant microbiome
- Abstract
- Chapter outline
- 6.1 Introduction
- 6.2 Plant–microbe dynamics and their multiomics studies
- 6.3 Industrial view of plant–microbial bioactive compounds extraction
- 6.4 Conclusion and future perspectives
- References
- Chapter 7. Genome-wide transcriptome profiling of crop plants
- Abstract
- Chapter outline
- 7.1 Introduction
- 7.2 Plant stress-responsive mechanisms
- 7.3 Transcriptomics
- 7.4 Genome-wide transcriptome profiling of some crop plants
- 7.5 Gene ontology and KEGG enrichment analysis of DEGs
- 7.6 Challenges and prospects in transcriptomics
- 7.7 Conclusion
- References
- Chapter 8. Role of noncoding RNA in regulation of biological processes of crop plants
- Abstract
- Chapter outline
- 8.1 Introduction
- 8.2 Classification and function of different types of noncoding RNAs
- 8.3 Biogenesis of siRNAs
- 8.4 Function of siRNA in plants
- 8.5 Housekeeping ncRNAs
- 8.6 Conclusion
- References
- Chapter 9. DNA barcoding of crop plants
- Abstract
- Chapter outline
- 9.1 Introduction
- 9.2 Plant species and the barcode
- 9.3 DNA sequences and barcode
- 9.4 Herbing of plant species
- Acknowledgments
- Conflict of interest
- Abbreviations
- References
- Chapter 10. DNA fingerprinting of crop plants
- Abstract
- Chapter outline
- 10.1 Introduction
- 10.2 DNA markers
- 10.3 Conclusion
- References
- Chapter 11. Marker assisted selection and breeding of crop plants
- Abstract
- Chapter outline
- 11.1 Introduction
- 11.2 Variations of MAS
- 11.3 Application of MAS in plant breeding
- 11.4 Selection of molecular markers
- 11.5 Conclusion
- References
- Chapter 12. An overview of gene regulations in crop plants
- Abstract
- Chapter outline
- 12.1 Introduction
- 12.2 Gene and genome
- 12.3 Are genes steady?
- 12.4 Regulation of gene expression in plants
- 12.5 Gene regulation in crop plants under stress conditions
- 12.6 Tools for analyzing gene expression
- References
- Chapter 13. Current understanding of proteomics in plants under drought stress conditions
- Abstract
- Chapter outline
- 13.1 Introduction
- 13.2 Approaches to improve the crop production
- 13.3 Drought stress and crop production
- 13.4 Proteomics of drought tolerance
- 13.5 Conclusion
- References
- Chapter 14. Current understanding of genomics, transcriptomics, proteomics, and metabolomics of crop plants under salt stress
- Abstract
- Chapter outline
- 14.1 Introduction
- 14.2 Response of crop plants to salt stress at genome levels
- 14.3 Response of crop plants to salt stress at transcriptome levels
- 14.4 Response of crop plants to salt stress at proteome levels
- 14.5 Response of crop plants to salt stress at metabolome levels
- References
- Chapter 15. Current understanding of genomics, transcriptomics, proteomics, and metabolomics of plants upon heavy metal stress
- Abstract
- Chapter outline
- 15.1 Introduction
- 15.2 Genomics
- 15.3 Transcriptomics
- 15.4 Proteomics
- 15.5 Peptides
- 15.6 Metabolomics
- 15.7 Phenols
- 15.8 Heavy metal ATPases
- 15.9 Amino acids
- 15.10 (ZIP) transporters ZRT, IRT-like proteins
- References
- Chapter 16. Safety and ethics associated with genomics, transcriptomics, proteomics, and metabolomics of crop plants
- Abstract
- Chapter outline
- 16.1 Introduction
- 16.2 Background and history
- 16.3 Use of molecular biogenomics
- 16.4 Issues in genetic engineering
- 16.5 Research and development concerning genetic engineering
- 16.6 Legal concern and update
- 16.7 Ethical concerns and genetically modified plants
- 16.8 Conclusion
- 16.9 Suggestion and a way forward
- References
- Chapter 17. Food safety and biotechnological products
- Abstract
- Chapter outline
- 17.1 Introduction
- 17.2 History, development, and current status of food safety systems
- 17.3 Role of biotechnology in the food production and processing
- 17.4 Role of governments in regulating and enforcing food safety
- 17.5 Strategies and programs to ensure the safety of the food supply
- 17.6 Safety of food produced with biotechnology processes
- 17.7 Benefits and risks of biotechnology in food production
- 17.8 Future of biotechnology in the food industry
- 17.9 Concluding remarks and perspectives
- References
- Index
- Edition: 1
- Published: July 11, 2023
- No. of pages (Paperback): 404
- No. of pages (eBook): 380
- Imprint: Academic Press
- Language: English
- Paperback ISBN: 9780323959896
- eBook ISBN: 9780323959902
AH
Azamal Husen
Azamal Husen served as Professor and Head of the Department of Biology, University of Gondar, Ethiopia and is a Foreign Delegate at Wolaita Sodo University, Wolaita, Ethiopia. Previously, he was a Visiting Faculty of the Forest Research Institute, and the Doon College of Agriculture and Forest at Dehra Dun, India. Husen’s research and teaching experience of 20 years includes biogenic nanomaterial fabrication and application, plant responses to nanomaterials, plant adaptation to harsh environments at the physiological, biochemical, and molecular levels, herbal medicine, and clonal propagation for improvement of tree species. Dr Husen contributed to R&D projects of World Bank, ICAR, ICFRE, JBIC etc. He has >250 publications . He is Series Co-Editor of ‘Plant Biology, Sustainability and Climate Change’, Elsevier.
Affiliations and expertise
Professor and Head, Department of Biology, University of Gondar, Ethiopia and Foreign Delegate, Wolaita Sodo University, Wolaita, EthiopiaAA
Altaf Ahmad
Professor Altaf Ahmad is working in Plant Biotechnology in the Department of Botany, Aligarh Muslim University, Aligarh, India. Dr. Ahmad has 22 years of research experience and has more than 150 publications. Dr. Ahmad handled several research projects funded by various agencies like BBSRS-UK, DST, DBT, CSIR, UGC, CCRUM, ICAR, and INSA. He was a Visiting Scientist at the Virginia Polytechnic and State University, USA University of Freiburg, University of Aberdeen, and the University of Cologne. Based on his research contribution, Dr. Ahmad has been honored with the INSA Medal for Young Scientist (2003) and Professor LSS Kumar Memorial Award (2003) of Indian National Science Academy, Young Scientist Award (2005) of Council of Science & Technology, Govt. of Uttar Pradesh, and elected as Associate of National Academy of Agricultural Sciences
Affiliations and expertise
Department of Botany Nanobiotechnology/Proteomics Aligarh Muslim University, Aligarh, IndiaRead Genomics, Transcriptomics, Proteomics and Metabolomics of Crop Plants on ScienceDirect