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Environmental Microbiology

A Laboratory Manual

  • 2nd Edition - December 13, 2004
  • Latest edition
  • Authors: Ian Pepper, Charles P. Gerba, Jeffrey W. Brendecke
  • Language: English

Environmental Microbiology: A Laboratory Manual is designed to meet the diverse requirements of upper division and graduate-level laboratory sessions in environmental microb… Read more

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Description

Environmental Microbiology: A Laboratory Manual is designed to meet the diverse requirements of upper division and graduate-level laboratory sessions in environmental microbiology. The experiments introduce students to the activities of various organisms and the analyses used to study them. The book is organized into three thematic sections: Soil Microbiology, Water Microbiology, and Environmental Biotechnology. The first section includes experiments on the soil as a habitat for microorganisms, and introduces the main types of soil microorganisms, how they interact with the soil, and the techniques used in their analysis. Experiments in the second section cover assays of microbial pathogens--bacteria, viruses, and protozoan parasites--used in food and water quality control as well as an exercise in applied bioremediation of contaminants in water. The final section on biotechnology includes applications of the polymerase chain reaction (PCR) for the detection of bacteria and the use of enrichment cultures and a computer-based, physiological test bank to isolate and identify a bacterium useful in bioremediation. Designed for maximum versatility and ease of use for both the student and instructor, each experiment is self-contained and includes theoretical, practical, and pedagogical material.

Key features

  • Incorporates new experiments and the latest techniques
  • Designed for maximum versatility and ease of use for the student and instructor
  • Each experiment is self-contained and includes theoretical, practical, and pedagogical material

Readership

Professional microbiologists working with soil and water; upper-division undergraduate and graduate students studying environmental microbiology.

Table of contents

Preface
Basic Protocols
Experiment 1 - Dilution and Plating of Bacteria and Growth Curves
Experiment 2 - Soil Moisture Content Determination
Examination of Soil Microorganisms via Microscopic and Cultural Assays
Experiment 3 - Contact Slide Assay
Experiment 4 - Filamentous Fungi
Experiment 5 - Bacteria and Actinomycetes
Experiment 6 - Algae: Enumeration by MPN
Microbial Transformations and Response to Contaminants
Experiment 7 - Oxidation of Sulfur in Soil
Experiment 8 - Dehydrogenase Activity of Soils
Experiment 9 - Nitrification and Denitrification
Experiment 10 - Enrichment and Isolation of Bacteria that Degrade 2, 4-dichlorophenoxyacetic acid
Experiment 11 - Adaptation of Soil Bacteria to Metals
Experiment 12 - Biodegradation of Phenol Compounds
Experiment 13 - Assimilable Organic Matter
Experiment 14 - Biochemical Oxygen Demand
Water Microbiology
Experiment 15 - Membrane Filter Technique
Experiment 16 - Bacteriological Examination of Water: the Coliform MPN Test
Experiment 17 - Detection of Bacteriophages
Experiment 18 - Film Medium for the Detection of Coliforms in Water, Food, and on Surfaces
Experiment 19 - Defined Substrate Technology for the Detection of Coliforms and Fecal Coliforms
Advanced Topics
Experiment 20 - Detection of Enteric Viruses in Water
Experiment 21 - Detection of Waterborne Parasites
Experiment 22 - Kinetics of Disinfection
Experiment 23 - Aerobiology: Sampling of Airborne Microorganisms
Experiment 24 - Detection and Identification of Bacteria via PCR and Subsequent BLAST Analysis of Amplified Sequences
Appendix 1: Preparation of Media and Stains for Each Experiment
Appendix 2: Glossary

Review quotes

"I would strongly recommend this laboratory manyal for any environmental microbiology course. It comes as a perfect complementary laboratory manual to the textbook "Environmental Microbiology"by R.M. Maier, I.L. Pepper and C.P. Gerber."—Dr. Hanan El-Mayas, Georgia State University

"Environmental Microbiology: A Laboratory Manual provides a very good introduction to a variety of approaches used to assess microorganisms in the environment."—Deborah T. Newby, Idaho National Laboratory

"The book has been written by two outstanding microbiologists and addresses critical methodological techniques for microbial analyses. The manual is designed for upper division and graduate-level laboratories in environmental microbiology. However, every laboratory dealing with microbes should have this excellent manual. In particular, I highly recommend it for laboratories that assess microbial risks and advantages. These include wastewater and water-treatment plants, soil-carbon-sequestration centers, and forensics and homeland-security laboratories. The bio-threat agents covered in the manual include bacteria (anthrax), viruses, and protozoan parasites (Cryptosporidium and Giardia). The new methods of polymerase chain reaction (PCR) and sequence analysis are given. Sample problems allow the self-study student to follow correct procedures. The glossary is a valuable appendix. I thank the authors for making this information available to the many scientists and technicians who will benefit from it."—M.B. Kirkham, Kansas State University and author of Principles of Soil and Plant Water Relations

"[The manual] familiarizes the students with basic procedures and hands on experiments that are used as standard procedures by environmental agencies such as EPA for assessing waste treatment quality, water and food quality....The experimental procedures are presented in clear, concise and easy to follow steps....I finally would strongly recommend this laboratory manual for any environmental microbiology course (at the undergraduate/graduate level). It comes as a perfect complementary laboratory manual to the Text Book Environmental Microbiology by R.M. Maier, I.L. Pepper and C.P. Gerba (Academic Press, 2002)."—Hanan Lea El-Mayas, Georgia State University

"...very useful for orienting current and future regulatorys to the problems and methods employed in the field." —David Yohalem, for INOCULUM

Product details

  • Edition: 2
  • Latest edition
  • Published: August 9, 2011
  • Language: English

About the authors

IP

Ian Pepper

Dr. Ian Pepper is a Regents Professor at the University of Arizona and also the Director of the University of Arizona Water and Energy Sustainable Technology Center (WEST). He is an environmental microbiologist whose research has focused on the fate and transport of microbial pathogens in air, water, soils and municipal wastes. His expertise has been recognized by membership on six National Academy of Sciences Committees. Dr. Pepper is a Fellow of the American Association for the Advancement of Science, the American Academy of Microbiology, the Soil Science Society of America, and the American Society of Agronomy. He is the author or co-author of seven textbooks and over 200 peer-reviewed journal articles.

Affiliations and expertise
Professor, University of Arizona , USA

CG

Charles P. Gerba

Dr. Charles P. Gerba is a Professor at the University of Arizona. He conducts research the transmission of pathogens through the environment. His recent research encompasses the transmission of pathogens by water, food and fomites; fate of pathogens in land applied wastes; development of new disinfectants; domestic microbiology and microbial risk assessment. He has been an author on more than 500 articles including several books in environmental microbiology and pollution science. He is a fellow of the American Academy of Microbiology and the American Association for the Advancement of Science. In 1998 he received the A. P. Black Award from the American Water Works Association for outstanding contributions to water science and in 1996 he received the McKee medal from the Water Environment Federation for outstanding contributions to groundwater protection. He received the 1999 Award of Excellence in Environmental Health from National Association of County and City Health Officials.
Affiliations and expertise
Professor at the University of Arizona.

JB

Jeffrey W. Brendecke

Affiliations and expertise
Anagennesis Custom Graphic Solutions, Tucson, Arizona, U.S.A.