Current Omics Advancement in Plant Abiotic Stress Biology
- 1st Edition - May 7, 2024
- Imprint: Academic Press
- Editors: Deepesh Bhatt, Manoj Nath, Saurabh Badoni, Rohit Joshi
- Language: English
- Paperback ISBN:9 7 8 - 0 - 4 4 3 - 2 1 6 2 5 - 1
- eBook ISBN:9 7 8 - 0 - 4 4 3 - 2 1 6 2 4 - 4
Current Omics Advancement in Plant Abiotic Stress Biology investigates the causal molecular factors underlying the respective mechanisms orchestrated by plants to help alleviate… Read more
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Request a sales quoteCurrent Omics Advancement in Plant Abiotic Stress Biology investigates the causal molecular factors underlying the respective mechanisms orchestrated by plants to help alleviate abiotic stress. Despite available knowledge of abiotic stresses in crop plants and high throughput tools and biotechnologies, in this book, a systematic effort has been made for integrating omics interventions across major sorts of abiotic stresses with special emphasis to major food crops infused with detailed mechanistic understanding, which would furthermore help contribute in dissecting the interdisciplinary areas of omics-driven plant abiotic stress biology in a much better manner.
It focuses on the integration of multi-OMICS biotechnologies in deciphering molecular intricacies of plant abiotic stress, namely drought, salt, cold, heat, and heavy metals in major C3 and C4 food crops. Together with this, the book provides updated knowledge of a common and unique set of molecular intricacies playing a vital role in coping up severe abiotic stresses in plants deploying multi-OMICS approaches.
- Describes biotechnological strategies to combat plant abiotic stress
- Covers the latest evidence based multipronged approaches in understanding omics perspective of stress tolerance
- Focuses on the integration of multi-OMICS technologies in deciphering molecular intricacies of plant abiotic stress
Postgraduate and graduate researchers in biochemistry, molecular biology, genetics, molecular breeding, systems biology, agriculture, crops for human foods, biological sciences, plant science, biotechnology, plant physiology and genetics, plant functional genomics, sustainable growth and economy, agrochemical and biological applications for crop protection. industry sectors, Private companies, spin-offs etc. in plant production; Policymakers, stakeholders, associations of plant growers (e.g. European Plant Science Organization)
- Cover image
- Title page
- Table of Contents
- Copyright
- List of contributors
- About the editors
- Foreword
- Preface
- Acknowledgments
- Chapter 1. Advancement in the understanding of the different abiotic stresses using “omics”
- Abstract
- 1.1 Drought stress
- 1.2 Salt stress
- 1.3 Heat stress
- 1.4 Nutrient stress
- 1.5 Cold stress
- References
- Chapter 2. Omics advancements in plant abiotic stress
- Abstract
- 2.1 Introduction
- 2.2 Wild relatives of crops are the promising source to enhance abiotic stress tolerance
- 2.3 Understanding the genetics of plant abiotic stress tolerance
- 2.4 Transcriptomics and RNA-mediated silencing
- 2.5 Growing significance of noncoding RNAs
- 2.6 Metabolomics and proteomics
- 2.7 Phenomics
- 2.8 Pangenomics for harnessing novel genomic diversity
- 2.9 Genomic selection: relevance and prospects
- 2.10 Computational biology tools
- 2.11 Conclusion
- Author contributions
- Declaration of competing interests
- Data availability statement
- Acknowledgments
- References
- Chapter 3. Implication of integrated multiomics approaches to decode the molecular basis of drought stress response in plants: an Omics’s perspective
- Abstract
- 3.1 Introduction
- 3.2 Cell signaling and molecular responses in plants during stress
- 3.3 Omics: an overview
- 3.4 Utilization of omics resources for exploring drought stress tolerance
- 3.5 Multiomics assisted approaches for crop improvement
- 3.6 Conclusion and future prospects
- Funding
- Acknowledgments
- Conflict of interest
- References
- Chapter 4. Advancement in understanding cold stress tolerance using “omics” tools
- Abstract
- 4.1 Introduction
- 4.2 Phenomics: phenotypic variations underlying cold stress in plants
- 4.3 Genomics: structural and functional changes in genome under cold stress response in plants
- 4.4 Transcriptomics: a tool to dissect genes responsible for cold stress tolerance
- 4.5 Understanding of protein regulation underlying cold stress
- 4.6 Metabolomics regulation for cold stress tolerance in plants
- 4.7 Interaction of cold with other abiotic stresses
- 4.8 Conclusion
- Author contributions
- Acknowledgments
- Conflicts of interest
- References
- Chapter 5. Omics-based strategies for improving salt tolerance in rice
- Abstract
- 5.1 Introduction
- 5.2 Omics-based approaches in the modern era
- 5.3 Conclusion
- Acknowledgments
- Author contributions
- Declaration of competing interest
- References
- Chapter 6. Master players in the chase of establishing heat tolerance: a molecular perspective
- Abstract
- 6.1 Introduction
- 6.2 Effects of high-temperature stress on plants
- 6.3 Signaling of heat stress
- 6.4 Identification of heat shock factors
- 6.5 Expression and regulation of heat shock factors
- 6.6 Conclusions
- Acknowledgment
- Author contribution
- Declaration of competing interest
- References
- Chapter 7. Advancements in understanding molecular interlinkages to combat combinations of drought and salinity stresses in crops
- Abstract
- 7.1 Introduction
- 7.2 Plant response to combined salinity and drought stress
- 7.3 Genetic control to combat both salinity and drought stresses
- 7.4 Applications of different molecular techniques
- 7.5 Quantitative trait loci in salinity and dehydration stresses
- 7.6 Conclusions and future prospective
- References
- Chapter 8. Integrated omics approaches for nutrient stress management in plants
- Abstract
- 8.1 Introduction
- 8.2 Abiotic stresses affect plants
- 8.3 The development of nutrient-stress-resistant or nutrient-efficient cultivars
- 8.4 The molecular basis of plant resilience to nutrient stress
- 8.5 Molecular mechanisms of gene expression in response to nutritional stress
- 8.6 Different omics approaches
- 8.7 Plant proteins that detect mineral deficiencies and trigger responses
- 8.8 The omics integration process
- 8.9 Analysis of the S-deficient transcriptome and metabolome together
- 8.10 Conclusion
- Acknowledgment
- Conflicts of interest
- References
- Chapter 9. Role of omics in understanding heavy metal responses and tolerance in plants
- Abstract
- 9.1 Introduction
- 9.2 Interconnection between plants and heavy metals
- 9.3 Omics approaches to investigate heavy metals tolerance
- 9.4 Future prospectives
- References
- Chapter 10. Physiological and genomic approaches for improving tolerance of flooding during germination and seedling establishment in rice
- Abstract
- 10.1 Introduction
- 10.2 Problems in the germination of rice under anoxia or hypoxia
- 10.3 Seedling establishment under flooding in a direct-seeded system
- 10.4 Physiological mechanism for anaerobic conditions tolerance in rice
- 10.5 Cloning of flood tolerance allele at seedling emergence stage
- 10.6 Role of anaerobic germination potential rice varieties in food securities
- 10.7 Marker-assisted selection breeding for anaerobic condition tolerance in rice varieties
- 10.8 Molecular mechanisms for anaerobic condition tolerance in rice varieties
- 10.9 Conclusion and future outlook
- References
- Chapter 11. Advances in understanding and engineering plant root system architecture to alleviate abiotic stress
- Abstract
- Abbreviations
- 11.1 Introduction
- 11.2 Root system architecture
- 11.3 Root phenomics
- 11.4 Root transcriptomics
- 11.5 Root metabolomics
- 11.6 Conclusions
- References
- Chapter 12. Role of omics in understanding signaling cascade of abiotic stress in plants
- Abstract
- 12.1 Introduction
- 12.2 Impact of abiotic stress at cellular level
- 12.3 Molecular mechanisms for abiotic stress signaling
- 12.4 Genomics
- 12.5 Epigenomics
- 12.6 Functional genomics for understanding abiotic stress responses
- References
- Chapter 13. Role of omics tools in the understanding of abiotic stress tolerance in wheat crop
- Abstract
- 13.1 Introduction
- 13.2 Omics approaches for developing abiotic stress tolerance in wheat
- 13.3 Conclusion
- References
- Chapter 14. Role of omics tools in understanding the stress tolerance in legumes
- Abstract
- 14.1 Introduction
- 14.2 Impacts of stresses on legumes
- 14.3 Genomics advances for stress tolerance in legumes
- 14.4 Integrated omics technologies for stress tolerance in legumes
- 14.5 Problems and prospects of omics technologies
- 14.6 Recommendation and future research prospects
- 14.7 Conclusions
- References
- Chapter 15. Developments in root omics in legume crops under drought stress
- Abstract
- 15.1 Introduction
- 15.2 Crucial role played by root traits in legumes’ drought tolerance
- 15.3 Omics approaches
- 15.4 Conclusion
- Authors’ contribution
- Conflict of interest
- References
- Chapter 16. Recent advances in abiotic stress tolerance in rice
- Abstract
- 16.1 Introduction
- 16.2 Different approaches to tackles abiotic stress tolerance plants
- 16.3 Conclusions and perspectives
- References
- Chapter 17. Omic tools in understanding stress tolerance in grasses
- Abstract
- 17.1 Introduction
- 17.2 Omics insight on abiotic and biotic stresses in Poaceae
- 17.3 Genomics: decoding stress-responsive genes
- 17.4 Transcriptomics: closer transcripts view
- 17.5 Proteomics: insights into protein structure, function, and regulation
- 17.6 Metabolomic analysis under stress responses
- 17.7 Ionomics: functional genomics of mineral nutrients
- 17.8 Phenomics: systematic study of phenotypes
- 17.9 Lipidomics to study lipid networks
- 17.10 Unification of all omics techniques
- 17.11 Conclusion
- Author contributions
- Acknowledgments
- Conflicts of interest
- References
- Chapter 18. Advances and challenges in omics approaches for alleviating abiotic stresses and improving cane yield in sugarcane crop
- Abstract
- 18.1 Introduction
- 18.2 Sugarcane
- 18.3 Abiotic stresses
- 18.4 Conventional breeding approaches
- 18.5 Advances and challenges in omics approaches
- 18.6 Transcriptomics for understanding response of crop under abiotic stresses
- 18.7 Proteomics changes in the crop under abiotic stresses
- 18.8 Other omics approaches to develop abiotic stresses–tolerant sugarcane crop
- 18.9 Conclusion
- References
- Chapter 19. Unraveling the mechanisms of various phospho-proteomics approach for crop improvement
- Abstract
- 19.1 Introduction
- 19.2 Phospho-proteomics
- 19.3 Phospho-proteomics technologies
- 19.4 Phospho-proteomics in plants worldwide
- 19.5 Insights into signaling networks in Arabidopsis through the phospho-proteomic techniques
- 19.6 Challenges in phospho-proteomics in plants
- 19.7 Future perspective
- References
- Chapter 20. Impact of omics in understanding reactive oxygen species metabolism in abiotic stress
- Abstract
- 20.1 Introduction
- 20.2 Reactive oxygen species
- 20.3 Plant metabolome study/metabolomics
- 20.4 Genomics and transcriptomics
- 20.5 Proteomics
- 20.6 Multiomics methods or technologies
- 20.7 Conclusion
- References
- Chapter 21. Omics technologies: an advanced approach to understand the systems using bioinformatics tools
- Abstract
- 21.1 Introduction
- 21.2 Concept of omics
- 21.3 Link between bioinformatics and omics data
- 21.4 Bioinformatics in deciphering omics data
- 21.5 Applications of omics studies
- 21.6 Concluding remarks
- References
- Chapter 22. Plant response to drought stress: epigenomic perspective
- Abstract
- 22.1 Introduction
- 22.2 Different types of epigenetic modifications
- 22.3 Role of DNA methylation during drought stress
- 22.4 Histone methylation/demethylation in response to water stresses
- 22.5 Histone acetylation level in drought responses
- 22.6 Concluding remarks
- References
- Chapter 23. Recent advancement in high-throughput “omics” technologies
- Abstract
- 23.1 Introduction
- 23.2 Omics approaches in the technological era
- 23.3 Mass spectroscopy-based omics
- 23.4 Phenomics prospective in legumes
- 23.5 Conclusion and future recommendations
- References
- Chapter 24. Omics approaches for exploring plant–microbe interaction combating abiotic stress
- Abstract
- 24.1 Introduction
- 24.2 Plant–microbe interaction
- 24.3 The two-facet microbial communities
- 24.4 Root–microbe interactions
- 24.5 Microbe–microbe interactions
- 24.6 Functions of rhizosphere microbes
- 24.7 Plant–microbe interaction in mitigating abiotic stress
- 24.8 Omics interventions for exploring plant–microbe interaction combating abiotic stress
- References
- Chapter 25. Impact of rhizospheric endophytes in combating abiotic stress in plants
- Abstract
- 25.1 Introduction
- 25.2 Enzyme production
- 25.3 Phytostimulation
- 25.4 Production of phytohormones
- 25.5 Production of secondary metabolites and biocontrol agents
- 25.6 Siderophore production
- 25.7 Drought stress
- 25.8 Temperature
- 25.9 Salinity stress
- 25.10 Nutrient stress
- 25.11 Conclusion
- References
- Chapter 26. Metagenomics for mitigation of heavy metal toxicity in plants
- Abstract
- 26.1 Introduction
- 26.2 Elevated concentrations of heavy metals
- 26.3 Avoidance mechanisms of plants on heavy metals toxicity
- 26.4 Tolerance mechanism by plants on heavy metals’ toxicity
- 26.5 Mechanism of heavy metal toxicity on plants
- 26.6 Heavy metals’ detoxification mechanisms
- 26.7 Microbial remediation of heavy metals for plant growth promotion
- 26.8 Plant–microbe association for heavy metal stress alleviation
- 26.9 Conclusion
- References
- Chapter 27. Genome editing as a promising tool to dissect the stress biology
- Abstract
- 27.1 Introduction
- 27.2 Genome editing as promising tool in plant abiotic stress resistance
- 27.3 Genome editing as promising tool in plant biotic stress resistance
- 27.4 Conclusion and future thrust
- References
- Chapter 28. Improving end-use quality under marginal environments employing 'omics' approach
- Abstract
- 28.1 Introduction
- 28.2 Rice grain quality traits determine market value
- 28.3 Rice grain quality under high temperature stress—focus on appearance quality
- 28.4 Milling quality under high temperature stress
- 28.5 Salinity stress and effect on appearance and milling quality
- 28.6 Drought stress influencing the grain quality
- 28.7 Joint effect of various abiotic stresses
- 28.8 Omics intervention in mitigating stress
- 28.9 Conclusion
- Acknowledgments
- Author contributions
- Declaration of competing interest
- References
- Chapter 29. Emerging roles of noncoding RNAs in regulation of drought stress responses
- Abstract
- 29.1 Introduction
- 29.2 miRNAs: tiny players with bigger roles in response to drought stress
- 29.3 Importance of lncRNA in drought stress response in plants
- 29.4 Future directions
- 29.5 Concluding remarks
- References
- Index
- Edition: 1
- Published: May 7, 2024
- No. of pages (Paperback): 488
- No. of pages (eBook): 420
- Imprint: Academic Press
- Language: English
- Paperback ISBN: 9780443216251
- eBook ISBN: 9780443216244
DB
Deepesh Bhatt
Dr. Deepesh Bhatt is working as an assistant professor at the Department of Biotechnology, Shree Ramkrishna Institute of Computer Education and Applied Sciences, Sarvajanik University, Surat, Gujarat, India. Earlier he worked as an associate research scientist at the Department of Research and Development, Mahyco Ltd. He has previously served as a postdoctoral research associate at the National Institute of Plant Biotechnology, New Delhi. His core area of research includes plant stress physiology, molecular cloning, and functional validation of stress-induced genes and their promoters. His other domain of work entails making use of nanotechnology in altering secondary metabolites in plants. He has published more than 33 research and review articles and chapters in reputed international journals. He has edited a book published by Springer Nature. He is a lifetime member of the Association of Microbiology of India and was awarded the Young Scientist by the Uttarakhand Council of Science and Technology.
Affiliations and expertise
Department of Biotechnology, Shree Ramkrishna Institute of Computer Education and Applied Sciences, Sarvajanik University, Surat, Gujarat, IndiaMN
Manoj Nath
Dr. Manoj Nath is presently working as a scientist at ICAR-Directorate of Mushroom Research, Solan, Himachal Pradesh. He worked as an assistant professor at Amity Institute of Microbial Technology, Amity University, Noida, Uttar Pradesh. Besides, he showed responsibility as a principal investigator in a project sponsored by the DST-SERB Early Career Research Award. He spent several years as postdoctoral research scientist at various renowned places in India, including the International Centre for Genetic Engineering and Biotechnology, New Delhi. He has published more than 40 research articles and book chapters for journals with international repute. He has edited a book published by Springer Nature.
Affiliations and expertise
ICAR, Indian Council of Agricultural Research, Chambaghat, Solan, Himachal Pradesh, IndiaSB
Saurabh Badoni
Dr. Saurabh Badoni is presently working as a scientist at the International Rice Research Institute South Asia Regional Centre in Varanasi, India. He has also been working as a Department of Biotechnology (DBT)-Ramalingaswami Fellow, being a recipient of Ramalingaswami Re-Entry Fellowship, which is one of the highly prestigious fellowships of the DBT, Government of India. Earlier he has served as a postdoctoral fellow at the headquarters of the International Rice Research Institute (IRRI) in Laguna, Philippines. He has also previously served as an international consultant to IRRI, Philippines, and a postdoctoral research associate at the National Institute of Plant Genome Research (NIPGR), New Delhi, after completing his PhD from G. B. Pant University of Agriculture and Technology, Pantnagar, India. He is a member of the Crop Science Society of the Philippines (lifetime), Philippines, Australasian Grain Science Association, Australia, and Indian Society of Genetics and Plant Breeding, India. He was honored with the Young Scientist Award by the State Science Academy (Uttarakhand), India, and IRRI-PDF. He has published more than 25 research articles in peer-reviewed journals and book chapters of international repute and is serving as an editor and a reviewer for a number of eminent journals.
Affiliations and expertise
Centre of Excellence in Rice Value Addition (CERVA), International Rice Research Institute-South Asia Regional Centre (IRRI-SARC), Varanasi, IndiaRJ
Rohit Joshi
Dr. Rohit Joshi is currently working as a senior scientist cum assistant professor (AcSIR), Biotechnology Division, at the CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India. After completing his PhD from G. B. Pant University of Agriculture and Technology, Pantnagar, he did his postdoctoral research at various prestigious institutions, such as Jawaharlal Nehru University, New Delhi, India; Indian Agricultural Research Institute, New Delhi, India; International Centre for Genetic Engineering and Biotechnology, New Delhi, India; and School of Plant, Environmental, and Soil Sciences, Louisiana State University, Baton Rouge, LA, United States. He handled 12 projects as a principal investigator or coprincipal investigator and published more than 84 research articles and chapters in journals and books of international and national repute. He is also serving various peer-reviewed journals as an associate editor (Plant Physiology Reports), an academic editor (PLOS ONE), a guest editor (Biology and Genes), a review editor (Frontiers in Plant Science and Pantnagar Journal of Research), and a reviewer (82 journals). For his contribution in research, he was elected as a member of the National Academy of Sciences, India, 2021 and Plant Tissue Culture Association of India, in 2020. He was also awarded the R.D. Asana Gold Medal Award and Young Scientist Award by the Indian Society for Plant Physiology, IARI, New Delhi, India.
Affiliations and expertise
Division of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDC Campus, Ghaziabad, Uttar Pradesh, IndiaRead Current Omics Advancement in Plant Abiotic Stress Biology on ScienceDirect